Formal Ontology In Information Systems

Ontology began life in ancient times as a fundamental part of philosophical enquiry concerned with the analysis and categorisation of what exists. In recent years, the subject has taken a practical turn with the advent of complex computerised information systems which are reliant on robust and coherent representations of their subject matter. The systematisation and elaboration of such representations and their associated reasoning techniques constitute the modern discipline of formal ontology, which is now being applied to such diverse domains as artificial intelligence, computational linguistics, bioinformatics, GIS, knowledge engineering, information retrieval and the Semantic Web. Researchers in all these areas are becoming increasingly aware of the need for serious engagement with ontology, understood as a general theory of the types of entities and relations making up their respective domains of enquiry, to provide a solid foundation for their work. The conference series Formal Ontology in Information Systems (FOIS) provides a meeting point for researchers from these and other disciplines with an interest in formal ontology, where both theoretical issues and concrete applications can be explored in a spirit of genuine interdisciplinarity. This volume contains the proceedings of the sixth FOIS conference, held in Toronto, Canada, during 11-14 May 2010, including invited talks by Francis Jeffry Pelletier, John Bateman, and Alan Rector and the 28 peer-reviewed submissions selected for presentation at the conference, ranging from foundational issues to more application-oriented topics. IOS Press is an international science, technical and medical publisher of high-quality books for academics, scientists, and professionals in all fields. Some of the areas we publish in: -Biomedicine -Oncology -Artificial intelligence -Databases and information systems -Maritime engineering -Nanotechnology -Geoengineering -All aspects of physics -E-governance -E-commerce -The knowledge economy -Urban studies -Arms control -Understanding and responding to terrorism -Medical informatics -Computer Sciences

FOIS is the flagship conference of the International Association for Ontology and its Applications (IAOA). Its interdisciplinary research focus lies at the intersection of philosophical ontology, linguistics, logic, cognitive science, and computer science, as well as in the applications of ontological analysis to conceptual modeling, knowledge engineering, knowledge management, information-systems development, library and information science, scientific research, and semantic technologies in general. This volume presents the proceedings of FOIS 2018, held in Cape Town, South Africa, from 19-21 September. It was the 10th edition and 20th anniversary of the conference series. The volume contains 19 papers grouped into 4 sections: Foundations (7 papers), Agents and Properties (4 papers), Methods and Tools (4 papers), and Applications (4 papers). Regarding the applications of ontologies, a broad spectrum of areas is covered, including in particular biology and medicine, IoT, engineering and linguistics. Formal Ontology in Information Systems - Proceedings of the 10th International Conference (FOIS 2018) will be of interest to researchers from all disciplines with an interest in formal ontology.

An introduction to the field of applied ontology with examples derived particularly from biomedicine, covering theoretical components, design practices, and practical applications. In the era of “big data,” science is increasingly information driven, and the potential for computers to store, manage, and integrate massive amounts of data has given rise to such new disciplinary fields as biomedical informatics. Applied ontology offers a strategy for the organization of scientific information in computer-tractable form, drawing on concepts not only from computer and information science but also from linguistics, logic, and philosophy. This book provides an introduction to the field of applied ontology that is of particular relevance to biomedicine, covering theoretical components of ontologies, best practices for ontology design, and examples of biomedical ontologies in use. After defining an ontology as a representation of the types of entities in a given domain, the book distinguishes between different kinds of ontologies and taxonomies, and shows how applied ontology draws on more traditional ideas from metaphysics. It presents the core features of the Basic Formal Ontology (BFO), now used by over one hundred ontology projects around the world, and offers examples of domain ontologies that utilize BFO. The book also describes Web Ontology Language (OWL), a common framework for Semantic Web technologies. Throughout, the book provides concrete recommendations for the design and construction of domain ontologies.

Just as ontology developed over the centuries as part of philosophy, so in recent years ontology has become intertwined with the development of the information sciences. Researchers in such areas as artificial intelligence, formal and computational linguistics, biomedical informatics, conceptual modeling, knowledge engineering and information retrieval have come to realize that a solid foundation for their research calls for serious work in ontology, understood as a general theory of the types of entities and relations that make up their respective domains of inquiry. In all these areas, attention has started to focus on the content of information rather than on just the formats and languages in terms of which information is represented. A clear example of this development is provided by the many initiatives growing up around the project of the Semantic Web. And as the need for integrating research in these different fields arises, so does the realization that strong principles for building well-founded ontologies might provide significant advantages over ad hoc, case-based solutions.The tools of Formal Ontology address precisely these needs, but a real effort is required in order to apply such philosophical tools to the domain of Information Systems. Reciprocally, research in the information science raises specific ontological questions which call for further philosophical investigations.

Formal Ontology in Information Systems (FOIS) is the flagship conference of the International Association for Ontology and its Applications, a non-profit organization promoting interdisciplinary research and international collaboration at the intersection of philosophical ontology, linguistics, logic, cognitive science, and computer science. This book presents the 11 papers accepted for the 12th edition of FOIS. The conference was held from 13-17 September 2021 in Bozen-Bolzano, Italy, as a hybrid event with some participants attending on-site in Bolzano and others attending virtually online. The papers are divided into 3 sections and cover a wide range of topics: (1) Foundations, addressing fundamental issues; (2) Applications and Methods, presenting novel uses, systems, tools, and approaches; and (3) Domain Ontology, describing well-formed ontologies in particular subject areas.

Perspectives on Ontology Learning brings together researchers and practitioners from different communities − natural language processing, machine learning, and the semantic web − in order to give an interdisciplinary overview of recent advances in ontology learning. Starting with a comprehensive introduction to the theoretical foundations of ontology learning methods, the edited volume presents the state-of-the-start in automated knowledge acquisition and maintenance. It outlines future challenges in this area with a special focus on technologies suitable for pushing the boundaries beyond the creation of simple taxonomical structures, as well as on problems specifically related to knowledge modeling and representation using the Web Ontology Language. Perspectives on Ontology Learning is designed for researchers in the field of semantic technologies and developers of knowledge-based applications. It covers various aspects of ontology learning including ontology quality, user interaction, scalability, knowledge acquisition from heterogeneous sources, as well as the integration with ontology engineering methodologies.

Ontology is the philosophical discipline which aims to understand how things in the world are divided into categories and how these categories are related together. This is exactly what information scientists aim for in creating structured, automated representations, called ‘ontologies,’ for managing information in fields such as science, government, industry, and healthcare. Currently, these systems are designed in a variety of different ways, so they cannot share data with one another. They are often idiosyncratically structured, accessible only to those who created them, and unable to serve as inputs for automated reasoning. This volume shows, in a non-technical way and using examples from medicine and biology, how the rigorous application of theories and insights from philosophical ontology can improve the ontologies upon which information management depends.

The study of patterns in the context of ontology engineering for the semantic web was pioneered more than a decade ago by Blomqvist, Sandkuhl and Gangemi. Since then, this line of research has flourished and led to the development of ontology design patterns, knowledge patterns, and linked data patterns: the patterns as they are known by ontology designers, knowledge engineers, and linked data publishers, respectively. A key characteristic of those patterns is that they are modular and reusable solutions to recurrent problems in ontology engineering and linked data publishing. This book contains recent contributions which advance the state of the art on theory and use of ontology design patterns. The papers collected in this book cover a range of topics, from a method to instantiate content patterns, a proposal on how to document a content pattern, to a number of patterns emerging in ontology modeling in various situations.