Ibm Reference Architecture For Genomics Power Systems Edition

This IBM® Redbooks® publication introduces the IBM Reference Architecture for Genomics, IBM Power SystemsTM edition on IBM POWER8®. It addresses topics such as why you would implement Life Sciences workloads on IBM POWER8, and shows how to use such solution to run Life Sciences workloads using IBM PlatformTM Computing software to help set up the workloads. It also provides technical content to introduce the IBM POWER8 clustered solution for Life Sciences workloads. This book customizes and tests Life Sciences workloads with a combination of an IBM Platform Computing software solution stack, Open Stack, and third party applications. All of these applications use IBM POWER8, and IBM Spectrum ScaleTM for a high performance file system. This book helps strengthen IBM Life Sciences solutions on IBM POWER8 with a well-defined and documented deployment model within an IBM Platform Computing and an IBM POWER8 clustered environment. This system provides clients in need of a modular, cost-effective, and robust solution with a planned foundation for future growth. This book highlights IBM POWER8 as a flexible infrastructure for clients looking to deploy life sciences workloads, and at the same time reduce capital expenditures, operational expenditures, and optimization of resources. This book helps answer clients' workload challenges in particular with Life Sciences applications, and provides expert-level documentation and how-to-skills to worldwide teams that provide Life Sciences solutions and support to give a broad understanding of a new architecture.

This IBM® Redpaper publication provides an update to the original description of IBM Reference Architecture for Genomics. This paper expands the reference architecture to cover all of the major vertical areas of healthcare and life sciences industries, such as genomics, imaging, and clinical and translational research. The architecture was renamed IBM Reference Architecture for High Performance Data and AI in Healthcare and Life Sciences to reflect the fact that it incorporates key building blocks for high-performance computing (HPC) and software-defined storage, and that it supports an expanding infrastructure of leading industry partners, platforms, and frameworks. The reference architecture defines a highly flexible, scalable, and cost-effective platform for accessing, managing, storing, sharing, integrating, and analyzing big data, which can be deployed on-premises, in the cloud, or as a hybrid of the two. IT organizations can use the reference architecture as a high-level guide for overcoming data management challenges and processing bottlenecks that are frequently encountered in personalized healthcare initiatives, and in compute-intensive and data-intensive biomedical workloads. This reference architecture also provides a framework and context for modern healthcare and life sciences institutions to adopt cutting-edge technologies, such as cognitive life sciences solutions, machine learning and deep learning, Spark for analytics, and cloud computing. To illustrate these points, this paper includes case studies describing how clients and IBM Business Partners alike used the reference architecture in the deployments of demanding infrastructures for precision medicine. This publication targets technical professionals (consultants, technical support staff, IT Architects, and IT Specialists) who are responsible for providing life sciences solutions and support.

Advancing the science of medicine by targeting a disease more precisely with treatment specific to each patient relies on access to that patient's genomics information and the ability to process massive amounts of genomics data quickly. Although genomics data is becoming a critical source for precision medicine, it is expected to create an expanding data ecosystem. Therefore, hospitals, genome centers, medical research centers, and other clinical institutes need to explore new methods of storing, accessing, securing, managing, sharing, and analyzing significant amounts of data. Healthcare and life sciences organizations that are running data-intensive genomics workloads on an IT infrastructure that lacks scalability, flexibility, performance, management, and cognitive capabilities also need to modernize and transform their infrastructure to support current and future requirements. IBM® offers an integrated solution for genomics that is based on composable infrastructure. This solution enables administrators to build an IT environment in a way that disaggregates the underlying compute, storage, and network resources. Such a composable building block based solution for genomics addresses the most complex data management aspect and allows organizations to store, access, manage, and share huge volumes of genome sequencing data. IBM SpectrumTM Scale is software-defined storage that is used to manage storage and provide massive scale, a global namespace, and high-performance data access with many enterprise features. IBM Spectrum ScaleTM is used in clustered environments, provides unified access to data via file protocols (POSIX, NFS, and SMB) and object protocols (Swift and S3), and supports analytic workloads via HDFS connectors. Deploying IBM Spectrum Scale and IBM Elastic StorageTM Server (IBM ESS) as a composable storage building block in a Genomics Next Generation Sequencing deployment offers key benefits of performance, scalability, analytics, and collaboration via multiple protocols. This IBM RedpaperTM publication describes a composable solution with detailed architecture definitions for storage, compute, and networking services for genomics next generation sequencing that enable solution architects to benefit from tried-and-tested deployments, to quickly plan and design an end-to-end infrastructure deployment. The preferred practices and fully tested recommendations described in this paper are derived from running GATK Best Practices work flow from the Broad Institute. The scenarios provide all that is required, including ready-to-use configuration and tuning templates for the different building blocks (compute, network, and storage), that can enable simpler deployment and that can enlarge the level of assurance over the performance for genomics workloads. The solution is designed to be elastic in nature, and the disaggregation of the building blocks allows IT administrators to easily and optimally configure the solution with maximum flexibility. The intended audience for this paper is technical decision makers, IT architects, deployment engineers, and administrators who are working in the healthcare domain and who are working on genomics-based workloads.

This IBM® Redbooks® publication demonstrates and documents that the combination of IBM System x®, IBM GPFSTM, IBM GPFS-FPO, IBM Platform Symphony®, IBM Platform HPC, IBM Platform LSF®, IBM Platform Cluster Manager Standard Edition, and IBM Platform Cluster Manager Advanced Edition deliver significant value to clients in need of cost-effective, highly scalable, and robust solutions. IBM depth of solutions can help the clients plan a foundation to face challenges in how to manage, maintain, enhance, and provision computing environments to, for example, analyze the growing volumes of data within their organizations. This IBM Redbooks publication addresses topics to educate, reiterate, confirm, and strengthen the widely held opinion of IBM Platform Computing as the systems software platform of choice within an IBM System x environment for deploying and managing environments that help clients solve challenging technical and business problems. This IBM Redbooks publication addresses topics to that help answer customer's complex challenge requirements to manage, maintain, and analyze the growing volumes of data within their organizations and provide expert-level documentation to transfer the how-to-skills to the worldwide support teams. This IBM Redbooks publication is targeted toward technical professionals (consultants, technical support staff, IT Architects, and IT Specialists) who are responsible for delivering cost-effective computing solutions that help optimize business results, product development, and scientific discoveries.

This IBM® Redbooks® publication introduces and describes the IBM Elastic Storage® Server 5000 (ESS 5000) as a scalable, high-performance data and file management solution. The solution is built on proven IBM Spectrum® Scale technology, formerly IBM General Parallel File System (IBM GPFS). ESS is a modern implementation of software-defined storage, making it easier for you to deploy fast, highly scalable storage for AI and big data. With the lightning-fast NVMe storage technology and industry-leading file management capabilities of IBM Spectrum Scale, the ESS 3000 and ESS 5000 nodes can grow to over YB scalability and can be integrated into a federated global storage system. By consolidating storage requirements from the edge to the core data center — including kubernetes and Red Hat OpenShift — IBM ESS can reduce inefficiency, lower acquisition costs, simplify storage management, eliminate data silos, support multiple demanding workloads, and deliver high performance throughout your organization. This book provides a technical overview of the ESS 5000 solution and helps you to plan the installation of the environment. We also explain the use cases where we believe it fits best. Our goal is to position this book as the starting point document for customers that would use the ESS 5000 as part of their IBM Spectrum Scale setups. This book is targeted toward technical professionals (consultants, technical support staff, IT Architects, and IT Specialists) who are responsible for delivering cost-effective storage solutions with ESS 5000.

This IBM® Redbooks® publication highlights IBM Technical Computing as a flexible infrastructure for clients looking to reduce capital and operational expenditures, optimize energy usage, or re-use the infrastructure. This book strengthens IBM SmartCloud® solutions, in particular IBM Technical Computing clouds, with a well-defined and documented deployment model within an IBM System x® or an IBM Flex SystemTM. This provides clients with a cost-effective, highly scalable, robust solution with a planned foundation for scaling, capacity, resilience, optimization, automation, and monitoring. This book is targeted toward technical professionals (consultants, technical support staff, IT Architects, and IT Specialists) responsible for providing cloud-computing solutions and support.

This IBM® Redpaper publication explains how IBM Spectrum® Discover integrates with the IBM Watson® Knowledge Catalog (WKC) component of IBM Cloud® Pak for Data (IBM CP4D) to make the enriched catalog content in IBM Spectrum Discover along with the associated data available in WKC and IBM CP4D. From an end-to-end IBM solution point of view, IBM CP4D and WKC provide state-of-the-art data governance, collaboration, and artificial intelligence (AI) and analytics tools, and IBM Spectrum Discover complements these features by adding support for unstructured data on large-scale file and object storage systems on premises and in the cloud. Many organizations face challenges to manage unstructured data. Some challenges that companies face include: Pinpointing and activating relevant data for large-scale analytics, machine learning (ML) and deep learning (DL) workloads. Lacking the fine-grained visibility that is needed to map data to business priorities. Removing redundant, obsolete, and trivial (ROT) data and identifying data that can be moved to a lower-cost storage tier. Identifying and classifying sensitive data as it relates to various compliance mandates, such as the General Data Privacy Regulation (GDPR), Payment Card Industry Data Security Standards (PCI-DSS), and the Health Information Portability and Accountability Act (HIPAA). This paper describes how IBM Spectrum Discover provides seamless integration of data in IBM Storage with IBM Watson Knowledge Catalog (WKC). Features include: Event-based cataloging and tagging of unstructured data across the enterprise. Automatically inspecting and classifying over 1000 unstructured data types, including genomics and imaging specific file formats. Automatically registering assets with WKC based on IBM Spectrum Discover search and filter criteria, and by using assets in IBM CP4D. Enforcing data governance policies in WKC in IBM CP4D based on insights from IBM Spectrum Discover, and using assets in IBM CP4D. Several in-depth use cases are used that show examples of healthcare, life sciences, and financial services. IBM Spectrum Discover integration with WKC enables storage administrators, data stewards, and data scientists to efficiently manage, classify, and gain insights from massive amounts of data. The integration improves storage economics, helps mitigate risk, and accelerates large-scale analytics to create competitive advantage and speed critical research.