Topology And Geometry Of Biopolymers

This book contains the proceedings of the AMS Special Session on Topology of Biopolymers, held from April 21–22, 2018, at Northeastern University, Boston, MA. The papers cover recent results on the topology and geometry of DNA and protein knotting using techniques from knot theory, spatial graph theory, differential geometry, molecular simulations, and laboratory experimentation. They include current work on the following topics: the density and supercoiling of DNA minicircles; the dependence of DNA geometry on its amino acid sequence; random models of DNA knotting; topological models of DNA replication and recombination; theories of how and why proteins knot; topological and geometric approaches to identifying entanglements in proteins; and topological and geometric techniques to predict protein folding rates. All of the articles are written as surveys intended for a broad interdisciplinary audience with a minimum of prerequisites. In addition to being a useful reference for experts, this book also provides an excellent introduction to the fast-moving field of topology and geometry of biopolymers.

This book contains the proceedings of the AMS Special Session on Topology of Biopolymers, held from April 21-22, 2018, at Northeastern University, Boston, MA. The papers cover recent results on the topology and geometry of DNA and protein knotting using techniques from knot theory, spatial graph theory, differential geometry, molecular simulations, and laboratory experimentation. They include current work on the following topics: the density and supercoiling of DNA minicircles; the dependence of DNA geometry on its amino acid sequence; random models of DNA knotting; topological models of DNA r.

The papers showcase the breadth of discrete geometry through many new methods and results in a variety of topics. Also included are survey articles on some important areas of active research. This volume is aimed at researchers in discrete and convex geometry and researchers who work with abstract polytopes or string C C-groups. It is also aimed at early career mathematicians, including graduate students and postdoctoral fellows, to give them a glimpse of the variety and beauty of these research areas. Topics covered in this volume include: the combinatorics, geometry, and symmetries of convex polytopes; tilings; discrete point sets; the combinatorics of Eulerian posets and interval posets; symmetries of surfaces and maps on surfaces; self-dual polytopes; string C C-groups; hypertopes; and graph coloring.

This volume contains selected expository lectures delivered at the 2018 Maurice Auslander Distinguished Lectures and International Conference, held April 25–30, 2018, at the Woods Hole Oceanographic Institute, Woods Hole, MA. Reflecting recent developments in modern representation theory of algebras, the selected topics include an introduction to a new class of quiver algebras on surfaces, called “geodesic ghor algebras”, a detailed presentation of Feynman categories from a representation-theoretic viewpoint, connections between representations of quivers and the structure theory of Coxeter groups, powerful new applications of approximable triangulated categories, new results on the heart of a t t-structure, and an introduction to methods of constructive category theory.

This IMA Volume in Mathematics and its Applications MATHEMATICAL APPROACHES TO BIOMOLECULAR STRUCTURE AND DYNAMICS is one of the two volumes based on the proceedings of the 1994 IMA Sum mer Program on "Molecular Biology" and comprises Weeks 3 and 4 of the four-week program. Weeks 1 and 2 appeared as Volume 81: Genetic Mapping and DNA Sequencing. We thank Jill P. Mesirov, Klaus Schulten, and De Witt Sumners for organizing Weeks 3 and 4 of the workshop and for editing the proceedings. We also take this opportunity to thank the National Institutes of Health (NIH) (National Center for Human Genome Research), the National Science Foundation (NSF) (Biological Instrumen tation and Resources), and the Department of Energy (DOE), whose fi nancial support made the summer program possible. A vner Friedman Robert Gulliver v PREFACE The revolutionary progress in molecular biology within the last 30 years opens the way to full understanding of the molecular structures and mech anisms of living organisms. Interdisciplinary research in mathematics and molecular biology is driven by ever growing experimental, theoretical and computational power. The mathematical sciences accompany and support much of the progress achieved by experiment and computation as well as provide insight into geometric and topological properties of biomolecular structure and processes. This volume consists of a representative sample of the papers presented during the last two weeks of the month-long Institute for Mathematics and Its Applications Summer 1994 Program in Molecular Biology.

Articles in this volume are based on lectures given at three conferences on Geometry at the Frontier, held at the Universidad de la Frontera, Pucón, Chile in 2016, 2017, and 2018. The papers cover recent developments on the theory of algebraic varieties—in particular, of their automorphism groups and moduli spaces. They will be of interest to anyone working in the area, as well as young mathematicians and students interested in complex and algebraic geometry.

This book contains the proceedings of the AMS Special Session, in honor of S. K. Jain's 80th birthday, on Categorical, Homological and Combinatorial Methods in Algebra held from March 16–18, 2018, at Ohio State University, Columbus, Ohio. The articles contained in this volume aim to showcase the current state of art in categorical, homological and combinatorial aspects of algebra.

This volume contains the proceedings of the Workshop and 18th International Conference on Representations of Algebras (ICRA 2018) held from August 8–17, 2018, in Prague, Czech Republic. It presents several themes of contemporary representation theory together with some new tools, such as stable ∞ ∞-categories, stable derivators, and contramodules. In the first part, expanded lecture notes of four courses delivered at the workshop are presented, covering the representation theory of finite sets with correspondences, geometric theory of quiver Grassmannians, recent applications of contramodules to tilting theory, as well as symmetries in the representation theory over an abstract stable homotopy theory. The second part consists of six more-advanced papers based on plenary talks of the conference, presenting selected topics from contemporary representation theory: recollements and purity, maximal green sequences, cohomological Hall algebras, Hochschild cohomology of associative algebras, cohomology of local selfinjective algebras, and the higher Auslander–Reiten theory studied via homotopy theory.