Models Of Life

Reflecting the major advances that have been made in the field over the past decade, this book provides an overview of current models of biological systems. The focus is on simple quantitative models, highlighting their role in enhancing our understanding of the strategies of gene regulation and dynamics of information transfer along signalling pathways, as well as in unravelling the interplay between function and evolution. The chapters are self-contained, each describing key methods for studying the quantitative aspects of life through the use of physical models. They focus, in particular, on connecting the dynamics of proteins and DNA with strategic decisions on the larger scale of a living cell, using E. coli and phage lambda as key examples. Encompassing fields such as quantitative molecular biology, systems biology and biophysics, this book will be a valuable tool for students from both biological and physical science backgrounds.

An overview of current models of biological systems, reflecting the major advances that have been made over the past decade.

In this candid and witty autobiography, Nobel laureate Herbert A. Simon looks at his distinguished and varied career, continually asking himself whether (and how) what he learned as a scientist helps to explain other aspects of his life. A brilliant polymath in an age of increasing specialization, Simon is one of those rare scholars whose work defines fields of inquiry. Crossing disciplinary lines in half a dozen fields, Simon's story encompasses an explosion in the information sciences, the transformation of psychology by the information-processing paradigm, and the use of computer simulation for modeling the behavior of highly complex systems. Simon's theory of bounded rationality led to a Nobel Prize in economics, and his work on building machines that think—based on the notion that human intelligence is the rule-governed manipulation of symbols—laid conceptual foundations for the new cognitive science. Subsequently, contrasting metaphors of the maze (Simon's view) and of the mind (neural nets) have dominated the artificial intelligence debate. There is also a warm account of his successful marriage and of an unconsummated love affair, letters to his children, columns, a short story, and political and personal intrigue in academe.

This book develops the mathematical tools essential for students in the life sciences to describe interacting systems and predict their behavior. From predator-prey populations in an ecosystem, to hormone regulation within the body, the natural world abounds in dynamical systems that affect us profoundly. Complex feedback relations and counter-intuitive responses are common in nature; this book develops the quantitative skills needed to explore these interactions. Differential equations are the natural mathematical tool for quantifying change, and are the driving force throughout this book. The use of Euler’s method makes nonlinear examples tractable and accessible to a broad spectrum of early-stage undergraduates, thus providing a practical alternative to the procedural approach of a traditional Calculus curriculum. Tools are developed within numerous, relevant examples, with an emphasis on the construction, evaluation, and interpretation of mathematical models throughout. Encountering these concepts in context, students learn not only quantitative techniques, but how to bridge between biological and mathematical ways of thinking. Examples range broadly, exploring the dynamics of neurons and the immune system, through to population dynamics and the Google PageRank algorithm. Each scenario relies only on an interest in the natural world; no biological expertise is assumed of student or instructor. Building on a single prerequisite of Precalculus, the book suits a two-quarter sequence for first or second year undergraduates, and meets the mathematical requirements of medical school entry. The later material provides opportunities for more advanced students in both mathematics and life sciences to revisit theoretical knowledge in a rich, real-world framework. In all cases, the focus is clear: how does the math help us understand the science?

Now in paperback, “a compelling, accessible, and provocative piece of work that forces us to question many of our assumptions” (Gillian Tett, author of Fool’s Gold). Quants, physicists working on Wall Street as quantitative analysts, have been widely blamed for triggering financial crises with their complex mathematical models. Their formulas were meant to allow Wall Street to prosper without risk. But in this penetrating insider’s look at the recent economic collapse, Emanuel Derman—former head quant at Goldman Sachs—explains the collision between mathematical modeling and economics and what makes financial models so dangerous. Though such models imitate the style of physics and employ the language of mathematics, theories in physics aim for a description of reality—but in finance, models can shoot only for a very limited approximation of reality. Derman uses his firsthand experience in financial theory and practice to explain the complicated tangles that have paralyzed the economy. Models.Behaving.Badly. exposes Wall Street’s love affair with models, and shows us why nobody will ever be able to write a model that can encapsulate human behavior.

A solutions manual to accompany An Introduction to Discrete Mathematical Modeling with Microsoft® Office Excel® With a focus on mathematical models based on real and current data, Models for Life: An Introduction to Discrete Mathematical Modeling with Microsoft® Office Excel® guides readers in the solution of relevant, practical problems by introducing both mathematical and Excel techniques. The book begins with a step-by-step introduction to discrete dynamical systems, which are mathematical models that describe how a quantity changes from one point in time to the next. Readers are taken through the process, language, and notation required for the construction of such models as well as their implementation in Excel. The book examines single-compartment models in contexts such as population growth, personal finance, and body weight and provides an introduction to more advanced, multi-compartment models via applications in many areas, including military combat, infectious disease epidemics, and ranking methods. Models for Life: An Introduction to Discrete Mathematical Modeling with Microsoft® Office Excel® also features: A modular organization that, after the first chapter, allows readers to explore chapters in any order Numerous practical examples and exercises that enable readers to personalize the presented models by using their own data Carefully selected real-world applications that motivate the mathematical material such as predicting blood alcohol concentration, ranking sports teams, and tracking credit card debt References throughout the book to disciplinary research on which the presented models and model parameters are based in order to provide authenticity and resources for further study Relevant Excel concepts with step-by-step guidance, including screenshots to help readers better understand the presented material Both mathematical and graphical techniques for understanding concepts such as equilibrium values, fixed points, disease endemicity, maximum sustainable yield, and a drug’s therapeutic window A companion website that includes the referenced Excel spreadsheets, select solutions to homework problems, and an instructor’s manual with solutions to all homework problems, project ideas, and a test bank

What do biologists want? How will we know when we have 'made sense' of life? Explanations in the biological sciences are provisional and partial, judged by criteria as heterogenous as their subject matter. This text accounts for this diversity.

This textbook introduces a science philosophy called "information theoretic" based on Kullback-Leibler information theory. It focuses on a science philosophy based on "multiple working hypotheses" and statistical models to represent them. The text is written for people new to the information-theoretic approaches to statistical inference, whether graduate students, post-docs, or professionals. Readers are however expected to have a background in general statistical principles, regression analysis, and some exposure to likelihood methods. This is not an elementary text as it assumes reasonable competence in modeling and parameter estimation.