Molecular Theory Of Evolution

The subject of this book is the physico-chemical theory of the origin of life. Although this theory is still in statu nascendi, it has been developed in recent years to the point where a coherent presentation is possible. The book is intended as an introductory text for students of physics, chemistry or biology. This interdisciplinary aim has necessitated a choice of material based on the lowest common denominator of physicists and biologists. In particular, the predominantly mathematical and biological sections have been presented at the most elementary l.evel possible. The less mathematically inclined reader can omit Sections (5.3)-(5.5), (5.7)-(5.10), (6.2), (6.3), (9.1)-(9.3), (12.1) and (13.3) without losing the overall view. For critical reading of the manuscript, for discussions and for many useful suggestions I wish to thank M. Eigen (Gottingen), w.e. Gardiner (Austin), D. Porschke (Gottingen), P. Schuster (Vienna), P.R. Wills (Auckland) and P. Woolley (Berlin). The translation of the original, German manuscript into English was kindly undertaken by Paul Woolley. During this and subsequent stages of revision he introduced a great many improvements in the text and the presentation of material. My particular thanks are due to him for his decisive contribution to this book. Last of all I wish to thank Ingeborg Lechten for typing the text in its various stages of evolution. The completion of this book is largely to be attributed to her patience and efficiency.

This work provides a unified theory that addresses the important problem of the origin and maintenance of genetic variation in natural populations. With modern molecular techniques, variation is found in all species, sometimes at astonishingly high levels. Yet, despite these observations, the forces that maintain variation within and between species have been difficult subjects of study. Because they act very weakly and operate over vast time scales, scientists must rely on indirect inferences and speculative mathematical models. However, despite these obstacles, many advances have been made. The author's research in molecular genetics, evolution, and bio-mathematics has enabled him to draw on this work, and present a coherent and valuable view of the field. The book is divided into three parts. The first consists of three chapters on protein evolution, DNA evolution, and molecular mechanisms. This section reviews the experimental observations on genetic variation. The second part gives a unified treatment of the mathematical theory of selection in a fluctuating environment. The final two chapters combine the earlier assessments in a treatment of the scientific status of two competing theories for the maintenance of genetic variation. Steeped in the enormous advances population genetics has made over the past 25 years, this book has proven highly popular among human geneticists, biologists, evolutionary theorists, and bio-mathematicians.

This book is the first comprehensive treatment of this subject.

The subject of this book is the physico-chemical theory of the origin of life. Although this theory is still in statu nascendi, it has been developed in recent years to the point where a coherent presentation is possible. The book is intended as an introductory text for students of physics, chemistry or biology. This interdisciplinary aim has necessitated a choice of material based on the lowest common denominator of physicists and biologists. In particular, the predominantly mathematical and biological sections have been presented at the most elementary l.evel possible. The less mathematically inclined reader can omit Sections (5.3)-(5.5), (5.7)-(5.10), (6.2), (6.3), (9.1)-(9.3), (12.1) and (13.3) without losing the overall view. For critical reading of the manuscript, for discussions and for many useful suggestions I wish to thank M. Eigen (Gottingen), w.e. Gardiner (Austin), D. Porschke (Gottingen), P. Schuster (Vienna), P.R. Wills (Auckland) and P. Woolley (Berlin). The translation of the original, German manuscript into English was kindly undertaken by Paul Woolley. During this and subsequent stages of revision he introduced a great many improvements in the text and the presentation of material. My particular thanks are due to him for his decisive contribution to this book. Last of all I wish to thank Ingeborg Lechten for typing the text in its various stages of evolution. The completion of this book is largely to be attributed to her patience and efficiency.

One of this century's leading evolutionary biologists, Motoo Kimura revolutionized the field with his random drift theory of molecular evolution—the neutral theory—and his groundbreaking theoretical work in population genetics. This volume collects 57 of Kimura's most important papers and covers forty years of his diverse and original contributions to our understanding of how genetic variation affects evolutionary change. Kimura's neutral theory, first presented in 1968, challenged the notion that natural selection was the sole directive force in evolution. Arguing that mutations and random drift account for variations at the level of DNA and amino acids, Kimura advanced a theory of evolutionary change that was strongly challenged at first and that eventually earned the respect and interest of evolutionary biologists throughout the world. This volume includes the seminal papers on the neutral theory, as well as many others that cover such topics as population structure, variable selection intensity, the genetics of quantitative characters, inbreeding systems, and reversibility of changes by random drift. Background essays by Naoyuki Takahata examine Kimura's work in relation to its effects and recent developments in each area.

The study of evolution at the molecular level has given the subject of evolutionary biology a new significance. Phylogenetic 'trees' of gene sequences are a powerful tool for recovering evolutionary relationships among species, and can be used to answer a broad range of evolutionary and ecological questions. They are also beginning to permeate the medical sciences. In this book, the authors approach the study of molecular evolution with the phylogenetic tree as a central metaphor. This will equip students and professionals with the ability to see both the evolutionary relevance of molecular data, and the significance evolutionary theory has for molecular studies. The book is accessible yet sufficiently detailed and explicit so that the student can learn the mechanics of the procedures discussed. The book is intended for senior undergraduate and graduate students taking courses in molecular evolution/phylogenetic reconstruction. It will also be a useful supplement for students taking wider courses in evolution, as well as a valuable resource for professionals. First student textbook of phylogenetic reconstruction which uses the tree as a central metaphor of evolution. Chapter summaries and annotated suggestions for further reading. Worked examples facilitate understanding of some of the more complex issues. Emphasis on clarity and accessibility.

Motoo Kimura, as founder of the neutral theory, is uniquely placed to write this book. He first proposed the theory in 1968 to explain the unexpectedly high rate of evolutionary change and very large amount of intraspecific variability at the molecular level that had been uncovered by new techniques in molecular biology. The theory - which asserts that the great majority of evolutionary changes at the molecular level are caused not by Darwinian selection but by random drift of selectively neutral mutants - has caused controversy ever since. This book is the first comprehensive treatment of this subject and the author synthesises a wealth of material - ranging from a historical perspective, through recent molecular discoveries, to sophisticated mathematical arguments - all presented in a most lucid manner.

This book presents and explains modern statistical methods and computational algorithms for the comparative analysis of genetic sequence data in the fields of molecular evolution, molecular phylogenetics, statistical phylogeography, and comparative genomics. The book offers numerous examples of real data analysis and numerical calculations to illustrate the theory, in addition to the working problems at the end of each chapter. The coverage of maximum likelihood and Bayesian methods are in particular up-to-date, comprehensive, and authoritative.