Plant Microbe Dynamics

Plants and microbes have co-evolved and interacted with each other in nature. Understanding the complex nature of the plant-microbe interface can pave the way for novel strategies to improve plant productivity in an eco-friendly manner. The microbes associated with plants, often called plant microbiota, are an integral part of plant life. The significance of the plant microbiome is a reliable approach toward sustainability to meet future food crises and rejuvenate soil health. Profiling plant-associate microbiomes (genome assemblies of all microbes) is an emerging concept in understanding plant-microbe interactions. Microbiota extends the plant capacity to acclimatize fluctuating environmental conditions through several mechanisms. Thus, unraveling the mystery of plant-microbe dynamics through latest technologies to better understand the role of metabolites and signal pathway mechanisms is very important. This book shares the latest insight on omics technologies to unravel plant-microbe dynamic interactions and other novel phytotechnologies for cleaning contaminated soils. Besides, it also provides brief insight on the recently discovered clustered regularly interspaced short palindromic repeats CRISPR-Cas9, which is a genome editing tool to explore plant-microbe interactions and how this genome editing tool helps to improve the ability of microbes/plants to combat abiotic/biotic stresses.

This book presents a detailed discussion on the direct interactions of plants and microorganisms in the rhizosphere environment. It includes fifteen chapters, each focusing on a specific component of plant-microbe interactions, such as the influence of plants on the root microbiome, and the downstream effects of rhizosphere microbial dynamics on carbon and nutrient fluxes in the surroundings. As such, the book helps readers gain a better understanding of diversity above the ground, and its effect on the microbiome and its functionality.

This books presents an updated compilation on fundamental interaction mechanisms of microbial communities with the plant roots and rhizosphere (belowground) and leaves and aerial parts (aboveground). Plant rhizopshere recruits its own microbial composition that survive there and help plants grow and develop better under biotic and abiotic conditions. Similar is the case with the beneficial microorganisms which are applied as inoculants with characteristic functions. The mechanism of plant-microbe interactions is interesting phenomenon in biological perspectives with numerous implications in the fields. The First volume focuses on the basic and fundamental mechanisms that have been worked out by the scientific communities taking into account different plant-microbe systems. This includes methods that decipher mechanisms at cellular, physiological, biochemical and molecular levels and the functions that are the final outcome of any beneficial or non-beneficial interactions in crop plants and microbes. Recent advances in this research area is covered in different book chapters that reflect the impact of microbial interactions on soil and plant health, dynamics of rhizosphere microbial communities, interaction mechanisms of microbes with multiple functional attributes, microbiome of contrasting crop production systems (organic vs conventional), mechanisms behind symbiotic and pathogenic interactions, endophytic (bacterial and fungal) interaction and benefits, rhizoplane and endosphere associations, signalling cascades and determinants in rhizosphere, quorum sensing in bacteria and impact on interaction, mycorrhizal interaction mechanisms, induced disease resistance and plant immunization, interaction mechanisms that suppress disease and belowground microbial crosstalk with plant rhizosphere. Methods based on multiphasic and multi-omics approaches were discussed in detail by the authors. Content-wise, the book offers an advanced account on various aspects of plant-microbe interactions and valuable implications in agro-ecological perspectives.

The study of plant-microbe associations by new techniques has significantly improved our understanding of the structure and specificity of the plant microbiome. Yet, microbiome function and the importance of the plant’s microbiome in the context of human and plant health are largely unexplored. Comparable with our human microbiome, millions of microbes inhabit plants, forming complex ecological communities that influence plant growth and health through its collective metabolic activities and host interactions. Viewing the microbiota from an ecological perspective can provide insight into how to promote plant health and stress tolerance of their hosts or how to adapt to a changing climate by targeting this microbial community. Moreover, the plant microbiome has a substantial impact on human health by influencing our gut microbiome by eating raw plants such as lettuce and herbs but also by influencing the microbiome of our environment through airflow. This research topic comprising reviews, original and opinion articles highlights the current knowledge regarding plant microbiomes, their specificity, diversity and function as well as all aspects studying the management of plant microbiomes to enhance plant growth, health quality and stress tolerance.

Key Features: Shares the latest insight on omics technologies to unravel plant-microbe dynamic interactions and other novel phytotechnologies for cleaning contaminated soils. It also provides brief insight on the recently discovered clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9-a genome editing tool to explore plant-microbe interactions and how this genome editing tool helps to improve the ability of microbes/plants to combat abiotic/biotic stresses.

Recent years have seen tremendous progress in unraveling the molecular basis of different plant-microbe interactions. Knowledge has accumulated on the mecha nisms of the microbial infection of plants, which can lead to either disease or resistance. The mechanisms developed by plants to interact with microbes, whether viruses, bacteria, or fungi, involve events that can lead to symbiotic association or to disease or tumor formation. Cell death caused by pathogen infection has been of great interest for many years because of its association with plant resistance. There appear to be two types of plant cell death associated with pathogen infection, a rapid hypersensitive cell death localized at the site of infection during an incompatible interaction between a resistant plant and an avirulent pathogen, and a slow, normosensitive plant cell death that spreads beyond the site of infection during some compatible interactions involving a susceptible plant and a virulent, necrogenic pathogen. Plants possess a number of defense mechanisms against infection, such as (i) production of phytoalexin, (ii) formation of hydrolases, (iii) accumulation of hydroxyproline-rich glycoprotein and lignin deposition, (iv) production of pathogen-related proteins, (v) produc tion of oligosaccharides, jasmonic acid, and various other phenolic substances, and (vi) production of toxin-metabolizing enzymes. Based on these observations, insertion of a single suitable gene in a particular plant has yielded promising results in imparting resistance against specific infection or disease. It appears that a signal received after microbe infection triggers different signal transduction pathways.

Plants and microbes interact in a complex relationship that can have both harmful and beneficial impacts on both plant and microbial communities. Effectors, secreted microbial molecules that alter plant processes and facilitate colonization, are central to understanding the complicated interplay between plants and microbes. Effectors in Plant-Microbe Interactions unlocks the molecular basis of this important class of microbial molecules and describes their diverse and complex interactions with host plants. Effectors in Plant Microbe Interactions is divided into five sections that take stock of the current knowledge on effectors of plant-associated organisms. Coverage ranges from the impact of bacterial, fungal and oomycete effectors on plant immunity and high-throughput genomic analysis of effectors to the function and trafficking of these microbial molecules. The final section looks at effectors secreted by other eukaryotic microbes that are the focus of current and future research efforts. Written by leading international experts in plant-microbe interactions, Effectors in Plant Microbe Interactions, will be an essential volume for plant biologists, microbiologists, pathologists, and geneticists.