The Holobiont Imperative

This book examines how the growing knowledge of the huge range of animal-bacterial interactions, whether in shared ecosystems or intimate symbioses, is fundamentally altering our understanding of animal biology. Individuals from simple invertebrates to human are not solitary, homogenous entities but consist of complex communities of many species that likely evolved during a billion years of coexistence. Defining the individual microbe-host conversations in these consortia, is a challenging but necessary step on the path to understanding the function of the associations as a whole. The hologenome theory of evolution considers the holobiont with its hologenome as a unit of selection in evolution. This new view may have profound impact on understanding a strictly microbe/symbiont-dependent life style and its evolutionary consequences. It may also affect the way how we approach complex environmental diseases from corals (coral bleaching) to human (inflammatory bowel disease etc). The book is written for scientists as well as medically interested persons in the field of immunobiology, microbiology, evolutionary biology, evolutionary medicine and corals.

The book includes 19 selected contributions presented at the 21st Evolutionary Biology Meeting, which took place in Marseille in September 2017. The chapters are grouped into the following five categories: · Genome/Phenotype Evolution · Self/Nonself Evolution · Origin of Biodiversity · Origin of Life · Concepts The annual Evolutionary Biology Meetings in Marseille serve to gather leading evolutionary biologists and other scientists using evolutionary biology concepts, e.g. for medical research. The aim of these meetings is to promote the exchange of ideas to encourage interdisciplinary collaborations. Offering an up-to-date overview of recent findings in the field of evolutionary biology, this book is in invaluable source of information for scientists, teachers and advanced students.

Mutualisms, interactions between two species that benefit both of them, have long captured the public imagination. Their influence transcends levels of biological organisation from cells to populations, communities, and ecosystems. Focusing on a range of ecological and evolutionary aspects over different scales (from individual to ecosystem), the chapters in this book provide expert coverage of our current understanding of mutualism whilst highlighting the most important questions that remain to be answered.

For almost a century and a half, biologists have gone to the seashore to study life. The oceans contain rich biodiversity, and organisms at the intersection of sea and shore provide a plentiful sampling for research into a variety of questions at the laboratory bench: How does life develop and how does it function? How are organisms that look different related, and what role does the environment play? From the Stazione Zoologica in Naples to the Marine Biological Laboratory in Woods Hole, the Amoy Station in China, or the Misaki Station in Japan, students and researchers at seaside research stations have long visited the ocean to investigate life at all stages of development and to convene discussions of biological discoveries. Exploring the history and current reasons for study by the sea, this book examines key people, institutions, research projects, organisms selected for study, and competing theories and interpretations of discoveries, and it considers different ways of understanding research, such as through research repertoires. A celebration of coastal marine research, Why Study Biology by the Sea? reveals why scientists have moved from the beach to the lab bench and back.

EPUB and EPDF available Open Access under CC-BY-NC-ND licence. We tend to hold people responsible for their choices, but not for what they can’t control: their nature, genes or biological makeup. This thought-provoking collection redefines the boundaries of moral responsibility. It shows how epigenetics reveals connections between our genetic make-up and our environment. The essays challenge established notions of human nature and the nature/nurture divide and suggest a shift in focus from individual to collective responsibility. Uncovering the links between our genetic makeup, environment and experiences, this is an important contribution to ongoing debates on ethics, genetics and responsibility.

The One Health concept, introduced at the beginning of the 2000s, is a worldwide strategy for promoting multidisciplinary partnerships and information in all facets of health care sciences, perceiving the interrelationship between humans, animals, plants, and their common environment. Recent advances in DNA sequencing technology and computational biology have revolutionized the field of the microbiome. Information surrounding uncultured microorganisms provides a comprehensive analysis of the relationships between an animal, the environment, and human's microbiota, including various disease correlations. In this Research Topic, we are interested in exploring how environmental stress effects bacterial communities, and how those changes relate to human health and pathobiont transmission in experimental and big data analysis.

"You take antibiotics to fight an infection. Unfortunately, the treatment also kills the community of bacteria in your gut microbiome; you now have digestion issues. You might start eating yogurt to reintroduce good bacteria. Or, if the bacterial community is more significantly disordered, you might need a "fecal microbiota transplant" - a doctor transfers stool from a healthy donor into your gut. The new bacteria community thrives, and you can again digest your food. If all the same types of bacteria are present in this new community, has your microbiome "regenerated"? What if the bacteria are completely different, but they perform the same function? How do the answers to these questions change if we look at the cells in a regrown salamander limb or the flora in a replanted forest? In this second book in the Regeneration Series, a philosopher of science and molecular biologist, S. Andrew Inkpen and W. Ford Dolittle, investigate these questions and their consequences. As the examples above show, asking about whether microbial communities can regenerate, what that might mean, and why it matters is not just an academic question. Offering provocations and an understanding that go beyond the descriptive work that has been published to date, this book offers an accessible conceptual and theoretical understanding of regeneration and evolution in microbial communities that will be useful across disciplines including in philosophy of biology, conservation biology, microbiomics, evolutionary biology, and community ecology"--

One of the most profound paradigms that have transformed our understanding about life over the last decades was the acknowledgement that microorganisms play a central role in shaping the past and present environments on Earth and the nature of all life forms. Each organism is the product of its history and all extant life traces back to common ancestors, which were microorganisms. Nowadays, microorganisms represent the vast majority of biodiversity on Earth and have survived nearly 4 billion years of evolutionary change. Microbial evolution occurred and continues to take place in a great variety of environmental conditions. However, we still know little about the processes of evolution as applied to microorganisms and microbial populations. In addition, the molecular mechanisms by which microorganisms communicate/interact with each other and with multicellular organisms remains poorly understood. Such patterns of microbe-host interaction are essential to understand the evolution of microbial symbiosis and pathogenesis.Recent advances in DNA sequencing, high-throughput technologies, and genetic manipulation systems have enabled studies that directly characterize the molecular and genomic bases of evolution, producing data that are making us change our view of the microbial world. The notion that mutations in the coding regions of genomes are, in combination with selective forces, the main contributors to biodiversity needs to be re-examined as evidence accumulates, indicating that many non-coding regions that contain regulatory signals show a high rate of variation even among closely related organisms. Comparative analyses of an increasing number of closely related microbial genomes have yielded exciting insight into the sources of microbial genome variability with respect to gene content, gene order and evolution of genes with unknown functions. Furthermore, laboratory studies (i.e. experimental microbial evolution) are providing fundamental biological insight through direct observation of the evolution process. They not only enable testing evolutionary theory and principles, but also have applications to metabolic engineering and human health. Overall, these studies ranging from viruses to Bacteria to microbial Eukaryotes are illuminating the mechanisms of evolution at a resolution that Darwin, Delbruck and Dobzhansky could barely have imagined. Consequently, it is timely to review and highlight the progress so far as well as discuss what remains unknown and requires future research. This book explores the current state of knowledge on the molecular mechanisms of microbial evolution with a collection of papers written by authors who are leading experts in the field.