The Ontology Of Physics For Biology

This book introduces semantic representations of multiscale, multidomain physiological systems that link to qualitative reasoning and to quantitative analysis of biophysical processes in health and disease. Two major public health problems, diabetes and hypertension, serve as use-cases to illustrate the depth and rigor of such representations for logical inference and quantitative analysis. Central to this approach is the Ontology of Physics for Biology (OPB) that formally represents the foundations of classical physics and engineering system dynamics that are the basis for our understanding of biomedical entities, processes, and functional relationships. Furthermore, we introduce OPB-based software for annotating and abstracting available biosimulation models for reuse, recombination, and for archiving of physics-based biomedical knowledge. We have formalized and leveraged physics-based biological knowledge as a working view of physiology and biophysics from three distinct perspectives: (1) biologists and biomedical investigators, (2) biophysicists and bioengineers, and (3) biomedical ontologists and informaticists. We present a logical and intuitive semantics of classical physics as a tool for mediating and translating biophysical knowledge among biomedical domains. Daniel L. Cook, MD, PhD John H. Gennari, PhD Maxwell L. Neal, PhD

"The majority of the papers herein originated at the workshop 'Process Philosophy of Biology' ... held in Exeter in November 2014."--Page vii.

This comprehensive anthology draws together writings by leading philosophers of science and will prove invaluable for any philosophy of science course.

Physics in Biology and Medicine, Fourth Edition, covers topics in physics as they apply to the life sciences, specifically medicine, physiology, nursing and other applied health fields. This is a concise introductory paperback that provides practical techniques for applying knowledge of physics to the study of living systems and presents material in a straightforward manner requiring very little background in physics or biology. Applicable courses are Biophysics and Applied Physics. This new edition discusses biological systems that can be analyzed quantitatively, and how advances in the life sciences have been aided by the knowledge of physical or engineering analysis techniques. The volume is organized into 18 chapters encompassing thermodynamics, electricity, optics, sound, solid mechanics, fluid mechanics, and atomic and nuclear physics. Each chapter provides a brief review of the background physics before focusing on the applications of physics to biology and medicine. Topics range from the role of diffusion in the functioning of cells to the effect of surface tension on the growth of plants in soil and the conduction of impulses along the nervous system. Each section contains problems that explore and expand some of the concepts. The text includes many figures, examples and illustrative problems and appendices which provide convenient access to the most important concepts of mechanics, electricity, and optics in the body. Physics in Biology and Medicine will be a valuable resource for students and professors of physics, biology, and medicine, as well as for applied health workers. Provides practical techniques for applying knowledge of physics to the study of living systems Presents material in a straight forward manner requiring very little background in physics or biology Includes many figures, examples and illustrative problems and appendices which provide convenient access to the most important concepts of mechanics, electricity, and optics in the body

Alfred North Whitehead is arguably the most original 20th-century philosopher of nature and metaphysics. In recent decades a number of physicists have produced ground-breaking new theories in fundamental physics influenced by his process philosophy. In contrast, few biologists are even aware that Whitehead’s radical rethinking of the Cartesian assumptions implicit in 19th-century sciences might be relevant to their enterprise. This book seeks to fill this gap by exploring how Whitehead’s process ontology might provide a new philosophical foundation for the biosciences of the 21st century. The central premise shared by all of the volume’s authors is the idea that all living processes are irreducible processes. Each chapter focuses on assumptions implicit in some of the core concepts of biology – such as organism, evolution, information, and teleology – that play crucial explanatory roles in the biosciences, but as metaphysical concepts fall outside its purview. The authors each identify important shortcomings implicit in contemporary biological paradigms and show how an approach grounded in a process-oriented metaphysics can avoid them.

The Pacific Symposium on Biocomputing (PSB) 2008 is an international, multidisciplinary conference for the presentation and discussion of current research in the theory and application of computational methods in problems of biological significance. Presentations are rigorously peer reviewed and are published in an archival proceedings volume. PSB 2008 will be held on January 4?8, 2008 at the Fairmont Orchid, Big Island of Hawaii. Tutorials will be offered prior to the start of the conference.PSB 2008 will bring together top researchers from the US, the Asian Pacific nations, and around the world to exchange research results and address open issues in all aspects of computational biology. It is a forum for the presentation of work in databases, algorithms, interfaces, visualization, modeling, and other computational methods, as applied to biological problems, with emphasis on applications in data-rich areas of molecular biology.The PSB has been designed to be responsive to the need for critical mass in sub-disciplines within biocomputing. For that reason, it is the only meeting whose sessions are defined dynamically each year in response to specific proposals. PSB sessions are organized by leaders of research in biocomputing's ?hot topics.? In this way, the meeting provides an early forum for serious examination of emerging methods and approaches in this rapidly changing field.